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Ligand · EDE

EDE · Edeine B

EDE, Edeine B (C34 H59 N11 O10, 781.9 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
EDE
Formula
C34 H59 N11 O10
Class
ligand
Structures
3
PDB entries
2

Binding sites

EDE in 3 structures; the first of them:

  • 1I95 · Crystal structure of the 30S ribosomal subunit from thermus thermophilus in complex with… · EDE A2001 · binds U772, A773, G774, A775, G903, G1474, U1475, G1482
  • 4U4N · Crystal structure of Edeine bound to the yeast 80S ribosome · EDE 22180 · binds G904, U999, C1000, A1001, G1002, A1003, A1005, C1006 and 6 more
  • 1I95 · Crystal structure of the 30S ribosomal subunit from thermus thermophilus in complex with… · EDE A2001 · binds U772, A773, G774, A775, G903, G1474, U1475, G1482

Residues it binds most

G 4, A 4, U 4, C 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • WO2 · Octadecatungstenyl diphosphate
  • OHX · osmium (III) hexammine

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