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Ligand · DZK

DZK · (2~{S})-2-(phenylmethylsulfanyl)butanedioic acid

DZK, (2~{S})-2-(phenylmethylsulfanyl)butanedioic acid (C11 H12 O4 S, 240.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
DZK
Formula
C11 H12 O4 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

DZK in 2 structures; the first of them:

  • 6FKY · Crystal structure of zebrafish Sirtuin 5 in complex with 3-(benzylthio)succinyl-CPS1… · DZK I101 · binds ALA55, THR65, ARG67, ALA78, ALA82, TYR98, ARG101, GLN136 and 9 more
  • 6FKY · Crystal structure of zebrafish sirtuin 5 in complex with 3- (BENZYLTHIO)SUCCINYL-CPS1… · DZK I101 · binds ALA55, THR65, ARG67, ALA78, ALA82, TYR98, ARG101, ASN137 and 6 more

Residues it binds most

ALA 2, ARG 2, LYS 2, VAL 2, ASN 2, HIS 2, ILE 2, PHE 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • E9N · (2~{R})-2-(phenylmethylsulfanyl)butanedioic acid
  • NA · Sodium ion
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid

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