GL1X · GenesisL1 explorer

Ligand · DSU

DSU · ((2R,3S,4S,5S)-3,4-dihydroxy-5-(hydroxymethyl)-5-((2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methoxy-tetrahydro-2H-pyran-2-yloxy)-tetrahydrofuran-2-yl)methyl nonanoate

DSU, ((2R,3S,4S,5S)-3,4-dihydroxy-5-(hydroxymethyl)-5-((2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methoxy-tetrahydro-2H-pyran-2-yloxy)-tetrahydrofuran-2-yl)methyl nonanoate (C22 H40 O12, 496.6 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
DSU
Formula
C22 H40 O12
Class
ligand
Structures
6
PDB entries
3

Binding sites

DSU in 6 structures; the first of them:

  • 2FCT · SyrB2 with Fe(II), chloride, and alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, TRP132, GLU137, PHE138 and 7 more
  • 2FCU · SyrB2 with alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, GLU137, PHE138, GLY139 and 8 more
  • 2FCV · SyrB2 with Fe(II), bromide, and alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, TRP132, GLU137, PHE138 and 7 more
  • 2FCT · SYRB2 with FE(II), chloride, and alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, TRP132, GLU137, PHE138 and 7 more
  • 2FCU · SYRB2 with alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, GLU137, PHE138, GLY139 and 8 more
  • 2FCV · SYRB2 with FE(II), bromide, and alpha-ketoglutarate · DSU A896 · binds GLU16, ILE91, LEU92, GLY93, PRO94, TRP132, GLU137, PHE138 and 7 more

Residues it binds most

GLY 6, GLU 6, PHE 6, PRO 6, TRP 6, ASN 6, GLN 6, ILE 6, LEU 6, THR 6 (residue and the binding sites it lines).

Found with

  • AKG · 2-oxoglutaric acid
  • FE2 · Fe (II) ion
  • BR · Bromide ion
  • CL · Chloride ion

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