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Ligand · DO8

DO8 · 3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid

DO8, 3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid (C8 H15 O11 P, 318.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
DO8
Formula
C8 H15 O11 P
Class
sugar
Structures
2
PDB entries
1

Binding sites

DO8 in 2 structures; the first of them:

  • 1X6U · KDO8P synthase in it's binary complex with the product KDO8P · DO8 A2634 · binds ASN26, LYS55, SER57, LYS60, ASN62, ARG63, ASP95, HIS97 and 10 more
  • 1X6U · KDO8P synthase in IT'S binary complex with the product KDO8P · DO8 A2634 · binds ASN26, LYS55, SER57, LYS60, ASN62, ARG63, ASP95, HIS97 and 10 more

Residues it binds most

LYS 2, ASN 2, ASP 2, HIS 2, PHE 2, PRO 2, ALA 2, ARG 2, GLN 2, GLU 2 (residue and the binding sites it lines).

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