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Ligand · DO4

DO4 · 2,5-dioxopentanoic acid

DO4, 2,5-dioxopentanoic acid (C5 H6 O4, 130.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DO4
Formula
C5 H6 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

DO4 in 2 structures; the first of them:

  • 2Q1D · 2-keto-3-deoxy-D-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate · DO4 X897 · binds SER79, GLY80, ILE81, TYR104, GLU114, PHE116, GLU143, GLU145 and 6 more
  • 2Q1D · 2-keto-3-deoxy-D-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate · DO4 X897 · binds SER79, GLY80, ILE81, TYR104, GLU114, PHE116, GLU143, GLU145 and 6 more

Residues it binds most

GLU 2, GLY 2, ASP 2, ILE 2, LEU 2, LYS 2, PHE 2, SER 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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