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Ligand · DG2

DG2 · (2R)-2,3-diphosphoglyceric acid

DG2, (2R)-2,3-diphosphoglyceric acid (C3 H8 O10 P2, 266.0 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
DG2
Formula
C3 H8 O10 P2
Class
ligand
Structures
3
PDB entries
2

Binding sites

DG2 in 3 structures; the first of them:

  • 5KSI · Crystal structure of deoxygenated hemoglobin in complex with sphingosine phosphate and… · DG2 B202 · binds LYS82, LYS82
  • 8ORU · cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon… · DG2 AAA503 · binds LYS356, HIS380, LEU386
  • 5KSI · Crystal structure of deoxygenated hemoglobin in complex with sphingosine phosphate and… · DG2 B202 · binds LYS82, LYS82

Residues it binds most

LYS 10, GLY 3, ARG 4, GLU 3, SER 3, ALA 2, ASN 3, ASP 3, HIS 3, LEU 3 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • S1P · (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate
  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion
  • PO4 · Phosphate ion
  • EDO · 1,2-ethanediol

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