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Ligand · DEX

DEX · Dexamethasone

DEX, Dexamethasone (C22 H29 F O5, 392.5 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DEX
Formula
C22 H29 F O5
Class
ligand
Structures
11
PDB entries
9

Binding sites

DEX in 11 structures; the first of them:

  • 6NWK · Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex… · DEX A301 · binds MET29, LEU32, ASN33, GLY36, GLN39, TRP69, MET70, MET73 and 9 more
  • 7KRJ · The GR-Maturation Complex: Glucocorticoid Receptor in complex with Hsp90 and co-chaperone… · DEX D801 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, TRP600, MET601 and 11 more
  • 7YXC · Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment · DEX A1001 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, TRP600, MET601 and 14 more
  • 7YXD · Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment · DEX A1001 · binds MET560, LEU563, ASN564, GLY567, GLN570, TRP600, MET601, MET604 and 12 more
  • 7YXN · Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment · DEX A1001 · binds MET560, LEU563, ASN564, GLY567, GLN570, TRP600, MET601, MET604 and 9 more
  • 7YXO · Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment · DEX A1001 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, TRP600, MET601 and 13 more
  • 7YXP · Crystal structure of WT AncGR2-LBD WT bound to dexamethasone and SHP coregulator fragment · DEX A1001 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, TRP600, MET601 and 13 more
  • 8FFV · Cryo-EM structure of the GR-Hsp90-FKBP52 complex · DEX C801 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, TRP600, MET604 and 12 more
  • 6NWK · Structure of the ancestral glucocorticoid receptor 2 ligand binding domain in complex… · DEX A301 · binds MET29, LEU32, ASN33, GLY36, GLN39, TRP69, MET70, MET73 and 9 more
  • 6XK0 · Albumin-dexamethasone complex · DEX A601 · binds ARG208, LYS211, ALA212, VAL215, ASP323, GLY327, LEU346, ALA349 and 3 more
  • 7KRJ · The gr-maturation complex: glucocorticoid receptor in complex with HSP90 and co-chaperone… · DEX D801 · binds MET560, LEU563, ASN564, LEU566, GLY567, GLN570, MET604, ARG611 and 5 more

Residues it binds most

MET 16, LEU 17, PHE 17, GLN 16, ARG 17, ASN 17, CYS 16, GLY 17, THR 16, TRP 16 (residue and the binding sites it lines).

Found with

  • ATP · Adenosine-5'-triphosphate
  • MG · Magnesium ion
  • FMT · Formic acid
  • ACE · Acetyl group
  • DMS · Dimethyl sulfoxide
  • GOL · Glycerol
  • CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate
  • MYR · Myristic acid
  • NA · Sodium ion
  • CO3 · Carbonate ion
  • SO4 · Sulfate ion
  • UNX · Unknown atom or ion

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