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Ligand · DEB

DEB · 6-deoxyerythronolide B

DEB, 6-deoxyerythronolide B (C21 H38 O6, 386.5 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DEB
Formula
C21 H38 O6
Class
ligand
Structures
10
PDB entries
6

Binding sites

DEB in 10 structures; the first of them:

  • 5MNS · Structural and functional characterization of OleP in complex with 6DEB in sodium formate · DEB A502 · binds MET83, PHE84, LEU94, MET178, LEU179, SER240, ILE243, ALA244 and 6 more
  • 5MNV · Structural and functional characterization of OleP in complex with 6DEB in PEG · DEB A502 · binds MET83, PHE84, LEU94, ILE243, ALA244, GLU247, THR248, VAL291 and 6 more
  • 6ZI3 · Crystal structure of OleP-6DEB bound to L-rhamnose · DEB A502 · binds MET83, PHE84, LEU94, MET178, LEU179, SER240, ILE243, ALA244 and 6 more
  • 7Q89 · OleP mutant G92W in complex with 6DEB · DEB A502 · binds MET83, PHE84, TRP92, LEU94, MET178, LEU179, SER240, ILE243 and 7 more
  • 5MNS · Structural and functional characterization of olep in complex with 6DEB in sodium formate · DEB A502 · binds PHE84, LEU94, LEU179, ILE243, ALA244, THR248, VAL291, SER295 and 3 more
  • 5MNV · Structural and functional characterization of olep in complex with 6DEB in peg · DEB A502 · binds MET83, PHE84, LEU94, ILE243, ALA244, VAL291, GLY294, SER295 and 2 more

Residues it binds most

LEU 66, PHE 66, ILE 65, MET 59, SER 64, ALA 64, THR 59, VAL 54, TRP 12, GLY 10 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • FMT · Formic acid
  • GOL · Glycerol
  • NA · Sodium ion
  • RAM · alpha-L-rhamnopyranose
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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