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Ligand · DDN

DDN · 3,4-dihydro-2'-deoxyuridine-5'-monophosphate

DDN, 3,4-dihydro-2'-deoxyuridine-5'-monophosphate (C9 H15 N2 O8 P, 310.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
DDN
Formula
C9 H15 N2 O8 P
Class
ligand
Structures
4
PDB entries
2

Binding sites

DDN in 4 structures; the first of them:

  • 1VQ2 · Crystal structure of T4-bacteriophage deoxycytidylate deaminase, mutant R115E · DDN A308 · binds CYS19, SER21, TRP22, VAL24, ASN40, ARG91, HIS94, SER95 and 12 more
  • 2HVW · Crystal structure of dCMP deaminase from Streptococcus mutans · DDN A1301 · binds CYS24, ARG26, ALA27, VAL29, ASN45, GLY64, HIS65, CYS66 and 10 more
  • 1VQ2 · Crystal structure of T4-bacteriophage deoxycytidylate deaminase, mutant R115E · DDN A308 · binds CYS19, SER21, TRP22, VAL24, ASN40, ARG91, HIS94, SER95 and 12 more
  • 2HVW · Crystal structure of dcmp deaminase from streptococcus mutans · DDN A1301 · binds CYS24, ARG26, ALA27, VAL29, ASN45, GLY64, HIS65, CYS66 and 10 more

Residues it binds most

CYS 8, HIS 8, ALA 8, ARG 8, GLU 8, ASN 8, PRO 8, SER 2, TYR 8, VAL 8 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • DCP · 2'-deoxycytidine-5'-triphosphate
  • MG · Magnesium ion
  • DIO · 1,4-diethylene dioxide

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