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Ligand · DDI

DDI · Spiro[naphthalene-2(3H),3'(10'H)-pentaleno[1,2-b]naphthalene]-3,10'-dione, 2'-[(2-amino-2-deoxy-B-D-gulopyranosyl)oxy]-1,1',2',3'A,4,10'A-hexahydro-,(2'r,3'as,10'ar)-(9CI)

DDI, Spiro[naphthalene-2(3H),3'(10'H)-pentaleno[1,2-b]naphthalene]-3,10'-dione, 2'-[(2-amino-2-deoxy-B-D-gulopyranosyl)oxy]-1,1',2',3'A,4,10'A-hexahydro-,(2'r,3'as,10'ar)-(9CI) (C31 H31 N O7, 529.6 g/mol), in the MolNFT structures on…

Component
DDI
Formula
C31 H31 N O7
Class
ligand
Structures
4
PDB entries
2

Binding sites

DDI in 4 structures; the first of them:

  • 1P96 · Solution Structure of a Wedge-Shaped Synthetic Molecule at a Two-Base Bulge Site in DNA · DDI A21 · binds DA6, DG7, DT8, DT9, DA6, DT7
  • 1R4E · Solution structure of the Complex Formed between a Left-Handed Wedge-Shaped Spirocyclic… · DDI A15 · binds DA6, DG7, DT9, DA6, DT7
  • 1P96 · Solution structure of a wedge-shaped synthetic molecule at a two-base bulge site in DNA · DDI A21 · binds DA6, DG7, DT8, DT9, DA6, DT7
  • 1R4E · Solution structure of the complex formed between a left-handed wedge- shaped spirocyclic… · DDI A15 · binds DA6, DG7, DT9, DA6, DT7

Residues it binds most

DT 4, DA 4, DG 4 (residue and the binding sites it lines).

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