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Ligand · DB8

DB8 · 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile

DB8, 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile (C26 H29 Cl2 N5 O3, 530.5 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (6 PDB entries). Every binding…

Component
DB8
Formula
C26 H29 Cl2 N5 O3
Class
ligand
Structures
7
PDB entries
6

Binding sites

DB8 in 7 structures; the first of them:

  • 5I9X · Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with bosutinib (SKI-606) · DB8 A1001 · binds ILE619, ALA644, ILE645, LYS646, GLU663, ILE676, ILE690, THR692 and 9 more
  • 5VCY · Crystal structure of human MYT1 kinase domain in complex with bosutinib · DB8 A401 · binds LEU116, VAL124, ALA137, VAL138, LYS139, GLU157, VAL171, LEU185 and 10 more
  • 8R4Q · Salt inducible kinase 3 in complex with inhibitor · DB8 A401 · binds ARG70, ILE72, GLY73, VAL80, ALA93, ILE94, LYS95, GLU113 and 13 more
  • 5VC3 · Crystal structure of human WEE1 kinase domain in complex with bosutinib · DB8 A601 · binds GLU303, ILE305, GLY306, VAL313, ALA326, LYS328, GLU346, VAL360 and 10 more
  • 5VCY · Crystal structure of human MYT1 kinase domain in complex with bosutinib · DB8 A401 · binds LEU116, VAL124, ALA137, VAL138, LYS139, GLU157, VAL171, LEU185 and 9 more
  • 6FDY · Unc-51-like kinase 3 (ULK3) in complex with bosutinib · DB8 U301 · binds LEU20, VAL28, ALA42, LYS44, VAL75, MET91, GLU92, PHE93 and 6 more
  • 6OP9 · HER3 pseudokinase domain bound to bosutinib · DB8 A1101 · binds LEU696, VAL704, CYS721, ILE722, LYS723, VAL753, LEU766, THR768 and 10 more

Residues it binds most

GLU 12, LEU 12, ALA 12, ILE 10, VAL 12, GLY 11, ASN 11, LYS 12, ASP 11, THR 10 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • DMS · Dimethyl sulfoxide
  • PEG · Di(hydroxyethyl)ether
  • CL · Chloride ion
  • SO4 · Sulfate ion

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