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Ligand · DB5

DB5 · [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2, 3]triazol-4-yl] hydrogen carbonate

DB5, [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2, 3]triazol-4-yl] hydrogen carbonate (C9 H13 N3 O3, 211.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues…

Component
DB5
Formula
C9 H13 N3 O3
Class
ligand
Structures
3
PDB entries
2

Binding sites

DB5 in 3 structures; the first of them:

  • 5NI3 · sfGFP 204-204 mutant dimer · DB5 A303 · binds SER202, PHE204, THR225, ALA227, ARG73, SER202, LYS204, THR225 and 2 more
  • 5NHN · Super-folder green fluorescent protein artificiall dimer linked via 148 position · DB5 B301 · binds ASN146, LYS148, ARG168, VAL176, ASN146, PHE148, ARG168, ASN170 and 1 more
  • 5NI3 · Sfgfp 204-204 mutant dimer · DB5 A303 · binds SER202, PHE204, ARG73, SER202, LYS204, THR225

Residues it binds most

SER 4, ARG 5, THR 4, ALA 3, LYS 5, PHE 5, ASN 1, VAL 1 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid
  • NA · Sodium ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol

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