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Ligand · DB4

DB4 · (2R)-3-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate

DB4, (2R)-3-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate (C17 H32 O16 P2, 554.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
DB4
Formula
C17 H32 O16 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

DB4 in 2 structures; the first of them:

  • 4MXP · Structural Basis for PI(4)P-Specific Membrane Recruitment of the Legionella pneumophila… · DB4 A701 · binds TYR532, TYR534, ARG541, HIS543, ASP565, LYS568, LEU604, LYS606 and 10 more
  • 4MXP · Structural basis for PI(4)P-specific membrane recruitment of the legionella pneumophila… · DB4 A701 · binds TYR532, TYR534, ARG541, HIS543, ASP565, LYS568, LEU604, LYS606 and 10 more

Residues it binds most

LEU 2, THR 2, GLY 2, LYS 2, SER 2, TYR 2, ARG 2, ASP 2, GLN 2, HIS 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion

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