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Ligand · D9Y

D9Y · 1-cyclohexyl-3-[(1S,2S,3S,4R,5R)-3-hydroxy-4-(piperidin-1-yl)-6,8-dioxabicyclo[3.2.1]octan-2-yl]urea

D9Y, 1-cyclohexyl-3-[(1S,2S,3S,4R,5R)-3-hydroxy-4-(piperidin-1-yl)-6,8-dioxabicyclo[3.2.1]octan-2-yl]urea (C18 H31 N3 O4, 353.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
D9Y
Formula
C18 H31 N3 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

D9Y in 2 structures; the first of them:

  • 5QBP · Crystal structure of Endothiapepsin-NAT17-347290a complex · D9Y A409 · binds ILE10, ASP15, ALA16, ASP33, ASP35, TYR79, GLY80, ASP81 and 10 more
  • 5QBP · Crystal structure of endothiapepsin-NAT17-347290A complex · D9Y A409 · binds ASP15, ALA16, ASP33, TYR79, GLY80, ASP81, PHE116, ASP119 and 7 more

Residues it binds most

ASP 2, ILE 2, GLY 2, TYR 2, THR 2, ALA 2, LEU 2, PHE 2 (residue and the binding sites it lines).

Found with

  • ACT · Acetate ion
  • DMS · Dimethyl sulfoxide
  • GOL · Glycerol

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