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Ligand · D9G

D9G · N-dodecyl-N,N-dimethylglycinate

D9G, N-dodecyl-N,N-dimethylglycinate (C16 H33 N O2, 271.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
D9G
Formula
C16 H33 N O2
Class
ligand
Structures
3
PDB entries
2

Binding sites

D9G in 3 structures; the first of them:

  • 1YRX · Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides · D9G A302 · binds LEU31, CYS110, MET115, GLU122
  • 4MHU · Crystal structure of EctD from S. alaskensis with bound Fe · D9G B402 · binds HIS24, SER25, GLU26, HIS24, SER25, GLU26
  • 1YRX · Structure of a novel photoreceptor: the bluf domain of appa from rhodobacter sphaeroides · D9G A302 · binds LEU31, CYS110, MET115, GLU122

Residues it binds most

LEU 6, PHE 4, SER 5, GLU 3, ARG 2, CYS 2, GLN 2, HIS 1, MET 2, THR 2 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide
  • FE · Fe (III) ion

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