Ligand · D9D

D9D · (1S,2S,3S,4R,5R)-2-({[5-(hydroxymethyl)furan-2-yl]methyl}amino)-4-(morpholin-4-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol

D9D, (1S,2S,3S,4R,5R)-2-({[5-(hydroxymethyl)furan-2-yl]methyl}amino)-4-(morpholin-4-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol (C16 H24 N2 O6, 340.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component: D9D
Formula: C16 H24 N2 O6
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

D9D in 2 structures; the first of them:

5QBL · Crystal structure of Endothiapepsin-NAT17-347147 complex · D9D A405 · binds ALA16, ASP33, ASP35, TYR79, GLY80, ASP81, SER83, PHE116 and 8 more
5QBL · Crystal structure of endothiapepsin-NAT17-347147 complex · D9D A405 · binds ASP33, ASP35, TYR79, GLY80, ASP81, PHE116, ILE122, LEU125 and 5 more

Residues it binds most

ASP 4, ILE 2, GLY 2, LEU 4, PHE 3, THR 4, TYR 2, ALA 1, SER 1 (residue and the binding sites it lines).

Found with

ACT · Acetate ion
DMS · Dimethyl sulfoxide
EDO · 1,2-ethanediol
GOL · Glycerol

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