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Ligand · D6V

D6V · 2-[(3S)-pyrrolidin-3-yl]-1H-benzimidazole

D6V, 2-[(3S)-pyrrolidin-3-yl]-1H-benzimidazole (C11 H13 N3, 187.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
D6V
Formula
C11 H13 N3
Class
ligand
Structures
1
PDB entries
1

Binding sites

D6V in 1 structure; the first of them:

  • 5QBA · Crystal structure of endothiapepsin-FRG134 complex · D6V A409 · binds GLY37, GLY80, ASP81, PHE194, ILE217, ASP219, THR222, TYR226 and 2 more

Residues it binds most

ILE 1, ASP 1, GLY 1, PHE 1, THR 1, TYR 1 (residue and the binding sites it lines).

Found with

  • ACT · Acetate ion
  • DMS · Dimethyl sulfoxide
  • GOL · Glycerol

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