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Ligand · D4D

D4D · 2',3'-dehydro-2',3'-deoxy-thymidine 5'-diphosphate

D4D, 2',3'-dehydro-2',3'-deoxy-thymidine 5'-diphosphate (C10 H14 N2 O10 P2, 384.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
D4D
Formula
C10 H14 N2 O10 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

D4D in 2 structures; the first of them:

  • 1F3F · Structure of the H122G nucleoside diphosphate kinase / D4T-TRIPHOSPHATE.MG complex · D4D B163 · binds LYS16, TYR56, HIS59, PHE64, LEU68, ARG92, THR98, ARG109 and 4 more
  • 1F3F · Structure of the H122G nucleoside diphosphate kinase / D4T- TRIPHOSPHATE.MG complex · D4D B163 · binds LYS16, TYR56, HIS59, PHE64, LEU68, ARG92, THR98, ARG109 and 4 more

Residues it binds most

ARG 2, ASN 2, GLU 2, GLY 2, HIS 2, LEU 2, LYS 2, PHE 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • D4T · 2',3'-dehydro-2',3'-deoxy-thymidine 5'-triphosphate
  • MG · Magnesium ion
  • PO4 · Phosphate ion

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