Ligand · D2Y
D2Y · methyl 2-acetamido-4-O-{2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl}-2-deoxy-beta-D-glucopyranoside
D2Y, methyl 2-acetamido-4-O-{2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl}-2-deoxy-beta-D-glucopyranoside (C20 H32 N2 O13, 508.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB…
- Component
- D2Y
- Formula
- C20 H32 N2 O13
- Class
- ligand
- Structures
- 6
- PDB entries
- 3
Binding sites
D2Y in 6 structures; the first of them:
- 7SV3 · Crystal structure of SpaA-SLH in complex with 4,6-Pyr-beta-D-ManNAc-(1->4)-beta-D-GlcNAcOM… · D2Y A301 · binds ARG61, LEU106, MET107, GLN108, GLY109, LYS110, ASP111, LEU112 and 5 more
- 7SV5 · Crystal structure of SpaA-SLH/G109A in complex with… · D2Y A302 · binds PHE35, PHE44, SER45, GLY46, TYR47, PRO48, GLU63, LYS66 and 3 more
- 7SV6 · Crystal structure of SpaA-SLH/G46A/G109A in complex with… · D2Y A301 · binds ARG61, MET107, GLN108, ALA109, LYS110, LEU112, GLU127, LYS130 and 1 more
- 7SV3 · Crystal structure of spaa-slh in complex with 4,6-pyr-beta-D-mannac… · D2Y A301 · binds ARG61, MET107, GLN108, GLY109, LYS110, LEU112, GLU127, LYS130 and 1 more
- 7SV5 · Crystal structure of spaa-SLH/G109A in complex with 4,6-pyr-beta-D… · D2Y A302 · binds PHE44, SER45, GLY46, TYR47, PRO48, GLU63, LYS66, VAL67 and 2 more
- 7SV6 · Crystal structure of spaa-SLH/G46A/G109A in complex with 4,6-pyr-beta… · D2Y A301 · binds ARG61, MET107, GLN108, ALA109, LYS110, LEU112, GLU127, LYS130 and 1 more
Residues it binds most
LYS 8, ARG 8, GLU 8, GLY 6, TRP 8, LEU 6, GLN 6, PHE 5, VAL 4, MET 4 (residue and the binding sites it lines).
Found with
- GOL · Glycerol
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