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Ligand · D2X

D2X · 3-[(4-hydroxy-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium

D2X, 3-[(4-hydroxy-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium (C12 H18 N3 O8 P2 S +1, 426.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
D2X
Formula
C12 H18 N3 O8 P2 S +1
Class
ligand
Structures
2
PDB entries
1

Binding sites

D2X in 2 structures; the first of them:

  • 3D2X · Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine… · D2X A85 · binds G11, U12, U27, G28, G30, A31, A43, C45 and 6 more
  • 3D2X · Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine… · D2X A85 · binds G11, U12, U27, G28, G30, A31, A43, C45 and 6 more

Residues it binds most

G 4, C 4, A 4, U 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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