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Ligand · D1M

D1M · 5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione

D1M, 5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione (C12 H14 N2 O7, 298.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
D1M
Formula
C12 H14 N2 O7
Class
sugar
Structures
2
PDB entries
1

Binding sites

D1M in 2 structures; the first of them:

  • 4EL5 · Crystal structure of GPb in complex with DK12 · D1M A901 · binds GLY134, GLY135, LEU136, LEU139, ASP283, ASN284, ASP339, HIS377 and 10 more
  • 4EL5 · Crystal structure of gpb in complex with DK12 · D1M A901 · binds GLY134, GLY135, LEU136, LEU139, ASP283, ASN284, ASP339, HIS377 and 10 more

Residues it binds most

GLY 2, ALA 2, ASN 2, ASP 2, LEU 2, THR 2, GLU 2, HIS 2, SER 2, TYR 2 (residue and the binding sites it lines).

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