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Ligand · D0J

D0J · (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{9-[4-(methoxymethyl)-1H-1,2,3-triazol-1-yl]nonyl}piperidine-3,4,5-triol

D0J, (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{9-[4-(methoxymethyl)-1H-1,2,3-triazol-1-yl]nonyl}piperidine-3,4,5-triol (C19 H36 N4 O5, 400.5 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with…

Component
D0J
Formula
C19 H36 N4 O5
Class
ligand
Structures
1
PDB entries
1

Binding sites

D0J in 1 structure; the first of them:

  • 6B9P · Structure of gh 38 jack bean alpha-mannosidase in complex with a 36- valent iminosugar… · D0J A1001 · binds HIS23, ASP25, TRP28, ASP145, PHE147, ARG170, TYR210, ASP268 and 7 more

Residues it binds most

ASP 2, ARG 2, GLY 2, HIS 2, TRP 2, TYR 2, PHE 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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