GL1X · GenesisL1 explorer

Ligand · CN6

CN6 · (2R,5R,11S,14R)-2-(butanoyloxy)-5,8,11-trihydroxy-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate

CN6, (2R,5R,11S,14R)-2-(butanoyloxy)-5,8,11-trihydroxy-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (C31 H58 O17 P2, 764.7 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
CN6
Formula
C31 H58 O17 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

CN6 in 2 structures; the first of them:

  • 3CXH · Structure of yeast complex III with isoform-2 cytochrome c bound and definition of a… · CN6 C4031 · binds ASN27, TYR28, TRP29, MET32, LEU35, PHE88, MET91, VAL92 and 13 more
  • 3CXH · Structure of yeast complex III with isoform-2 cytochrome C bound and definition of a… · CN6 C4031 · binds ASN27, TYR28, TRP29, MET32, LEU35, PHE88, MET91, VAL92 and 13 more

Residues it binds most

MET 4, PHE 4, ILE 4, LEU 4, LYS 4, TYR 4, VAL 4, ARG 4, ASN 4, HIS 4 (residue and the binding sites it lines).

Found with

  • 6PH · (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate
  • 7PH · (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate
  • 8PE · (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate
  • 9PE · (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate
  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • SMA · Stigmatellin A
  • UMQ · Undecyl-maltoside
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose

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