GL1X · GenesisL1 explorer

Ligand · CLY

CLY · Clindamycin

CLY, Clindamycin (C18 H33 Cl N2 O5 S, 425.0 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
CLY
Formula
C18 H33 Cl N2 O5 S
Class
ligand
Structures
9
PDB entries
6

Binding sites

CLY in 9 structures; the first of them:

  • 1JZX · Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center… · CLY A2881 · binds A2041, A2042, G2044, A2045, A2430, C2431, A2432, A2482 and 4 more
  • 1YJN · Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of… · CLY 09000 · binds A2099, A2100, G2102, A2103, A2486, C2487, A2538, U2539 and 3 more
  • 3JZ0 · LinB complexed with clindamycin and AMPCPP · CLY A900 · binds TYR27, GLU42, TYR44, TYR75, GLU89, HIS91, PHE104, SER107 and 3 more
  • 4V7V · Crystal structure of the E. coli ribosome bound to clindamycin. · CLY BA3135 · binds G2057, A2058, A2059, G2061, A2451, C2452, A2503, U2504 and 3 more
  • 8CGD · Clindamycin bound to the 50S subunit · CLY a3002 · binds G2057, A2058, A2059, G2061, A2451, C2452, 2MA2503, PSU2504 and 3 more
  • 9C4G · Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound · CLY a3342 · binds G2240, A2241, A2242, G2244, A2633, C2634, 2MA2685, PSU2686 and 3 more
  • 1JZX · Structural basis for the interaction of antibiotics with the peptidyl transferase center… · CLY A2881 · binds A2041, A2042, G2044, A2045, A2430, C2431, A2432, A2482 and 4 more
  • 1YJN · Crystal structure of clindamycin bound to the G2099A mutant 50S ribosomal subunit of… · CLY 09000 · binds A2099, A2100, G2102, A2103, A2486, C2487, A2538, U2539 and 3 more
  • 3JZ0 · Linb complexed with clindamycin and ampcpp · CLY A900 · binds TYR27, GLU42, TYR44, TYR75, GLU89, HIS91, PHE104, SER107 and 3 more

Residues it binds most

A 7, G 7, U 7, TYR 4, C 7, GLU 4, MET 4, ILE 4, PHE 4, SER 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • K · Potassium ion
  • ZN · Zinc ion
  • APC · Diphosphomethylphosphonic acid adenosyl ester
  • CD · Cadmium ion
  • NA · Sodium ion
  • CL · Chloride ion
  • AM2 · Apramycin
  • ACT · Acetate ion

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.