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Ligand · CKB

CKB · 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione

CKB, 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione (C11 H16 N2 O7, 288.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
CKB
Formula
C11 H16 N2 O7
Class
sugar
Structures
2
PDB entries
1

Binding sites

CKB in 2 structures; the first of them:

  • 3BD7 · Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) thymine · CKB A940 · binds ASN282, PHE285, ALA610, GLY612, TYR613, HIS614
  • 3BD7 · Glycogen phosphorylase complex with 1(-D-glucopyranosyl) thymine · CKB A940 · binds ASN282, PHE285, ALA610, GLY612, TYR613, HIS614

Residues it binds most

GLY 4, ASN 4, ALA 4, ASP 2, HIS 4, LEU 2, THR 2, TYR 4, GLU 2, PHE 2 (residue and the binding sites it lines).

Found with

  • PLP · Pyridoxal-5'-phosphate

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