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Ligand · BND

BND · methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid

BND, methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid (C19 H26 N2 O9, 426.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
BND
Formula
C19 H26 N2 O9
Class
sugar
Structures
2
PDB entries
1

Binding sites

BND in 2 structures; the first of them:

  • 1OD9 · N-terminal of Sialoadhesin in complex with Me-a-9-N-benzoyl-amino-9-deoxy-Neu5Ac (BENZ… · BND A201 · binds TRP2, TYR44, ARG97, SER103, ARG105, TRP106, LEU107, ASP108 and 1 more
  • 1OD9 · N-terminal of sialoadhesin in complex with me-a-9-N-benzoyl-amino-9- deoxy-NEU5AC (benz… · BND A201 · binds TRP2, TYR44, ARG97, SER103, ARG105, TRP106, LEU107, ASP108 and 1 more

Residues it binds most

ARG 2, TRP 2, ASP 2, LEU 2, SER 2, TYR 2, VAL 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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