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Ligand · BD5

BD5 · N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine

BD5, N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine (C35 H35 N3 O8, 625.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
BD5
Formula
C35 H35 N3 O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

BD5 in 2 structures; the first of them:

  • 3HXB · Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 6) · BD5 B332 · binds TYR107, SER48, TRP52, LEU96, TYR97, LEU99, SER100, ARG144 and 10 more
  • 3HXB · Engineered rabggtase in complex with a peptidomimetic inhibitor (compound 6) · BD5 B332 · binds TYR107, SER48, TRP52, LEU96, TYR97, LEU99, SER100, ARG144 and 10 more

Residues it binds most

TYR 2, CYS 2, LEU 2, PHE 2, SER 2, TRP 2, ARG 2, GLN 2, GLY 2, HIS 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion

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