Ligand · APY

APY · 2-aminomethyl-pyridine

APY, 2-aminomethyl-pyridine (C6 H8 N2, 108.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: APY
Formula: C6 H8 N2
Class: ligand
Structures: 3
PDB entries: 3

Binding sites

APY in 3 structures; the first of them:

5FUI · Crystal structure of the C-terminal CBM6 of LamC a marine laminarianse from Zobellia… · APY A132 · binds TRP297, MET298, SER299, ASP329, ALA332, GLY368, LEU369, TYR370
7G97 · ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z57899718 · APY A201 · binds TYR74, PRO75, ASP76, THR77, PHE106, CYS107, VAL110
6XFN · Crystal structure of the SARS-cov-2 (COVID-19) main protease in complex with UAW243 · APY B4 · binds PHE140, LEU141, ASN142, SER144, CYS145, HIS163, HIS164, MET165 and 1 more

Residues it binds most

TYR 3, ASN 2, ASP 2, CYS 2, GLY 2, HIS 1, LEU 2, MET 2, PHE 2, SER 2 (residue and the binding sites it lines).

Found with

GOL · Glycerol
UZ7 · Phenyl hydrogen carbonate
V1V · (2S,3S)-3-amino-2-hydroxyhexanoic acid
MG · Magnesium ion
DMS · Dimethyl sulfoxide
FMT · Formic acid

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