GL1X · GenesisL1 explorer

Ligand · AKM

AKM · [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

AKM, [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate (C17 H29 N3 O14 P2, 561.4 g/mol), in…

Component
AKM
Formula
C17 H29 N3 O14 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

AKM in 2 structures; the first of them:

  • 4KCF · X-ray Structure of a KijD3 in Complex with FMN and… · AKM A501 · binds HIS101, MET102, SER105, ARG106, LEU108, THR109, TYR112, GLU113 and 15 more
  • 4KCF · X-ray structure of a KIJD3 in complex with FMN and dtdp-3-amino-2,3,6… · AKM A501 · binds HIS101, MET102, SER105, ARG106, LEU108, THR109, TYR112, GLU113 and 15 more

Residues it binds most

SER 2, ARG 2, ALA 2, GLN 2, MET 2, TYR 2, VAL 2, GLU 2, GLY 2, HIS 2 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide

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