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Ligand · AFD

AFD · alpha-D-allopyranose

AFD, alpha-D-allopyranose (C6 H12 O6, 180.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
AFD
Formula
C6 H12 O6
Class
sugar
Structures
3
PDB entries
2

Binding sites

AFD in 3 structures; the first of them:

  • 4GJJ · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex… · AFD B504 · binds PHE66, TRP57, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 4 more
  • 8JQ6 · Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with D-allose · AFD C503 · binds TRP42, HIS97, PHE138, ASN185, TRP187, GLU228, LYS230, ASP261 and 5 more
  • 4GJJ · Crystal structure of pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex… · AFD B504 · binds PHE66, TRP57, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 4 more

Residues it binds most

ASP 4, HIS 4, TRP 4, PHE 4, GLU 4, LYS 4, ASN 2 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • AOS · D-allose
  • ALL · beta-D-allopyranose

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