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Ligand · AD2

AD2 · 2'-deoxy-adenosine-3'-5'-diphosphate

AD2, 2'-deoxy-adenosine-3'-5'-diphosphate (C10 H15 N5 O9 P2, 411.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
AD2
Formula
C10 H15 N5 O9 P2
Class
ligand
Structures
2
PDB entries
2

Binding sites

AD2 in 2 structures; the first of them:

  • 1L2B · Mutm (fpg) DNA end-product structure · AD2 C17 · binds DC7, DT8, DG9, DC16, MET77, ARG112, ASN174, TYR242 and 3 more
  • 6LWR · Crystal structure of human NEIL1(K242) bound to duplex DNA containing a cleaved C:T… · AD2 B6 · binds MET81, ARG118, ASN176, TYR263, ARG277, THR278, DC5, DC6 and 2 more

Residues it binds most

ARG 3, DC 3, ASN 3, DG 3, DT 3, TYR 3, MET 2, THR 2, GLY 1, LYS 1 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion

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