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Ligand · A1D6G

A1D6G · 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid

A1D6G, 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-d…

Component
A1D6G
Formula
C50 H72 N4 O15
Class
ligand
Structures
4
PDB entries
4

Binding sites

A1D6G in 4 structures; the first of them:

  • 8Y36 · cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with… · A1D6G A3001 · binds U791, C1809, A2085, A2086, A2089, 2MA2530, G2532, C2613 and 3 more
  • 8Y37 · Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190. · A1D6G A3000 · binds U791, C1809, MA62085, A2086, A2089, 2MA2530, G2532, C2613 and 3 more
  • 8Y38 · Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with… · A1D6G A3000 · binds U791, C1809, MA62085, A2086, A2089, 2MA2530, G2532, C2613 and 3 more
  • 8Y39 · cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with… · A1D6G A3000 · binds U791, C1809, A2085, A2086, A2089, 2MA2530, G2532, C2613 and 3 more

Residues it binds most

C 4, A 4, U 4, 2MA 4, G 4, MA6 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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