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Ligand · 9YN

9YN · (2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide

9YN, (2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide (C16 H25 N7 O4, 379.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
9YN
Formula
C16 H25 N7 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

9YN in 2 structures; the first of them:

  • 5ON3 · Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu)… · 9YN A902 · binds SER227, TYR246, THR247, THR248, ARG249, ALA252, PHE325, VAL326 and 10 more
  • 5ON3 · Quaternary complex of mutant T252A of E. COLI leucyl-tRNA synthetase with TRNA(LEU)… · 9YN A902 · binds SER227, TYR246, THR247, THR248, ARG249, ALA252, PHE325, VAL326 and 10 more

Residues it binds most

VAL 4, ALA 4, ASP 4, THR 4, TYR 4, GLY 4, ARG 4, HIS 4, LEU 4, MET 4 (residue and the binding sites it lines).

Found with

  • LSS · 5'-O-(L-leucylsulfamoyl)adenosine
  • ZN · Zinc ion

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