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Ligand · 9OD

9OD · (2Z)-9-oxodec-2-enoic acid

9OD, (2Z)-9-oxodec-2-enoic acid (C10 H16 O3, 184.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
9OD
Formula
C10 H16 O3
Class
ligand
Structures
8
PDB entries
4

Binding sites

9OD in 8 structures; the first of them:

  • 3BFA · Crystal structure of a pheromone binding protein from Apis mellifera in complex with the… · 9OD A120 · binds VAL9, LEU12, VAL13, MET49, LEU52, LEU53, PHE56, LEU58 and 3 more
  • 3BFB · Crystal structure of a pheromone binding protein from Apis mellifera in complex with the… · 9OD A121 · binds VAL9, LEU12, VAL13, LEU52, LEU53, PHE56, LEU58, LEU73 and 3 more
  • 3CYZ · Dimeric crystal structure of a pheromone binding protein from Apis mellifera in complex… · 9OD A124 · binds MET49, LEU52, LEU53, MET70, LEU74, MET86, LEU104, ALA105 and 5 more
  • 3CZ0 · Dimeric crystal structure of a pheromone binding protein from Apis mellifera in complex… · 9OD A124 · binds MET49, LEU52, LEU53, MET70, MET86, LEU104, ALA105, VAL108 and 4 more
  • 3BFA · Crystal structure of a pheromone binding protein from apis mellifera in complex with the… · 9OD A120 · binds VAL9, LEU12, VAL13, MET49, LEU52, LEU53, PHE56, LEU58 and 3 more
  • 3BFB · Crystal structure of a pheromone binding protein from apis mellifera in complex with the… · 9OD A121 · binds VAL9, LEU12, VAL13, LEU52, LEU53, PHE56, LEU58, LEU73 and 3 more
  • 3CYZ · Dimeric crystal structure of a pheromone binding protein from apis mellifera in complex… · 9OD A124 · binds MET49, LEU52, LEU53, MET70, LEU74, MET86, LEU104, ALA105 and 5 more
  • 3CZ0 · Dimeric crystal structure of a pheromone binding protein from apis mellifera in complex… · 9OD A124 · binds MET49, LEU52, LEU53, MET70, MET86, LEU104, ALA105, VAL108 and 4 more

Residues it binds most

LEU 16, VAL 16, MET 14, ILE 16, ALA 12, PHE 14, TRP 6, ASP 4, LYS 4, TYR 4 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • CL · Chloride ion
  • MG · Magnesium ion

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