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Ligand · 9DI

9DI · 9-deazainosine

9DI, 9-deazainosine (C11 H13 N3 O5, 267.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
9DI
Formula
C11 H13 N3 O5
Class
ligand
Structures
4
PDB entries
2

Binding sites

9DI in 4 structures; the first of them:

  • 1A9P · Bovine purine nucleoside phosphorylase complexed with 9-deazainosine and phosphate · 9DI A290 · binds SER33, HIS86, TYR88, ALA116, ALA117, GLY118, PHE200, GLU201 and 9 more
  • 3KM8 · Crystal structuore of adenosine deaminase from mus musculus complexed with 9-deazainosine · 9DI A353 · binds HIS17, ASP19, LEU58, PHE61, LEU62, PHE65, ARG101, TYR102 and 11 more
  • 1A9P · Bovine purine nucleoside phosphorylase complexed with 9-deazainosine and phosphate · 9DI A290 · binds SER33, HIS86, TYR88, ALA116, ALA117, GLY118, PHE200, GLU201 and 9 more
  • 3KM8 · Crystal structuore of adenosine deaminase from mus musculus complexed with 9-deazainosine · 9DI A353 · binds HIS17, ASP19, LEU58, PHE61, LEU62, PHE65, ARG101, TYR102 and 11 more

Residues it binds most

HIS 6, ASP 4, LEU 4, PHE 6, ALA 6, GLY 6, SER 6, MET 6, TYR 6, ARG 4 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • PO4 · Phosphate ion

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