GL1X · GenesisL1 explorer

Ligand · 9DF

9DF · (6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide

9DF, (6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide (C27 H33 F3 N4 O3, 518.6 g/mol), in the MolNFT structures on…

Component
9DF
Formula
C27 H33 F3 N4 O3
Class
ligand
Structures
2
PDB entries
2

Binding sites

9DF in 2 structures; the first of them:

  • 7WH5 · Crystal structure of human ClpP in complex with ZG180 · 9DF A301 · binds ARG78, LEU79, GLU82, ILE84, HIS116, TYR118, TRP146, VAL148 and 10 more
  • 7WID · Crystal structure of Staphylococcus aureus ClpP in complex with ZG180 · 9DF A201 · binds ARG23, LEU24, ASP27, ILE29, MET31, TYR61, TYR63, ILE91 and 10 more

Residues it binds most

ILE 28, LEU 28, TYR 28, ARG 28, HIS 28, MET 14, PHE 28, SER 28, THR 28, VAL 28 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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