Ligand · 9B4

9B4 · (2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol

9B4, (2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol (C20 H42 O9, 426.6 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding…

Component: 9B4
Formula: C20 H42 O9
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

9B4 in 1 structure; the first of them:

5VHV · Pseudomonas fluorescens alkylpurine DNA glycosylase alkc bound to DNA containing an… · 9B4 D101 · binds LEU9, GLY86, PHE87, LEU90, TRP164, DA6, DG8, DT9 and 3 more

Residues it binds most

DT 2, GLY 2, LEU 2, DC 2, DG 2, PHE 2, TRP 2, DA 1, NRI 1, SER 1 (residue and the binding sites it lines).

Found with

NA · Sodium ion
GOL · Glycerol
MES · 2-(N-morpholino)-ethanesulfonic acid

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