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Ligand · 8DD

8DD · 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate

8DD, 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate (C10 H15 N5 O10 P2, 427.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
8DD
Formula
C10 H15 N5 O10 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

8DD in 2 structures; the first of them:

  • 3ACA · Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese · 8DD A2 · binds TRP28, ARG51, ARG84, ALA96, GLY97, LEU98, GLU112, GLU116 and 4 more
  • 3ACA · Crystal structure of human NUDT5 complexed with 8-oxo-dadp and manganese · 8DD A2 · binds TRP28, ARG51, ARG84, ALA96, GLY97, LEU98, GLU112, GLU116 and 4 more

Residues it binds most

GLU 4, ARG 4, GLY 4, TRP 4, ALA 4, LEU 4, THR 4, VAL 2 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion

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