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Ligand · 8CP

8CP · 2'-deoxy-5'-O-[(R)-hydroxy{[(r)-hydroxy(phosphonoamino) phosphoryl]oxy}phosphoryl]cytidine

8CP, 2'-deoxy-5'-O-[(R)-hydroxy{[(r)-hydroxy(phosphonoamino) phosphoryl]oxy}phosphoryl]cytidine (C9 H17 N4 O12 P3, 466.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its…

Component
8CP
Formula
C9 H17 N4 O12 P3
Class
ligand
Structures
3
PDB entries
2

Binding sites

8CP in 3 structures; the first of them:

  • 5UGN · DNA polymerase beta imidodiphosphate reactant complex · 8CP A404 · binds DG6, DG7, DC10, DC11, ARG149, GLY179, SER180, ARG183 and 11 more
  • 5UGN · DNA polymerase beta imidodiphosphate reactant complex · 8CP A404 · binds DG6, DC10, DC11, ARG149, GLY179, SER180, ARG183, SER188 and 10 more
  • 5UGP · DNA polymerase beta complex with a 1NT gap and dcmppnp · 8CP A401 · binds GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192, TYR271 and 8 more

Residues it binds most

ASP 3, GLY 3, SER 3, ARG 3, DC 3, DG 3, ASN 3, PHE 3, THR 3, TYR 3 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • 2PN · Imidodiphosphoric acid

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