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Ligand · 7PO

7PO · hexacosanoic acid

7PO, hexacosanoic acid (C26 H52 O2, 396.7 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
7PO
Formula
C26 H52 O2
Class
ligand
Structures
4
PDB entries
4

Binding sites

7PO in 4 structures; the first of them:

  • 7X07 · Cryo-EM structure of human ABCD1 in the presence of C26:0 · 7PO A801 · binds SER226, SER244, ALA245, LEU249, MET335, LYS336, TRP339, SER340 and 4 more
  • 8QTN · Cryo-EM structure of the apo yeast Ceramide Synthase · 7PO A402 · binds TRP231, HIS255, THR259, LEU262, ILE263, SER265, SER266, PHE269 and 18 more
  • 8QTR · Cryo-EM structure of the FB-bound yeast Ceramide Synthase · 7PO A403 · binds HIS255, VAL258, THR259, LEU262, ILE263, SER265, SER266, PHE269 and 20 more
  • 8Y2M · Cryo-EM structure of the FB1-bound Lac1-Lip1 complex · 7PO A503 · binds TYR224, TRP231, HIS255, THR259, LEU262, ILE263, SER265, SER266 and 18 more

Residues it binds most

ILE 6, LEU 7, SER 7, PHE 6, TYR 6, MET 7, ASP 5, VAL 6, GLY 6, HIS 6 (residue and the binding sites it lines).

Found with

  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • PIJ · [(2S)-1-hexadecanoyloxy-3-[hydroxy-[(2S,3R,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] heptadecanoate
  • NH4 · Ammonium ion
  • 6PL · (4S,7R)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide
  • A1D5V · (2~{R})-2-[2-[(5~{R},6~{R},7~{S},9~{S},11~{R},16~{R},18~{S},19~{S})-19-azanyl-6-[(3~{R})-3-carboxy-5-oxidanyl-5-oxidanylidene-pentanoyl]oxy-5,9-dimethyl-11,16,18-tris(oxidanyl)icosan-7-yl]oxy-2-oxidanylidene-ethyl]butanedioic acid
  • WXE · Macrofusine

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