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Ligand · 7LM

7LM · N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide

7LM, N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide (C36 H63 N O9, 653.9 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its…

Component
7LM
Formula
C36 H63 N O9
Class
ligand
Structures
3
PDB entries
2

Binding sites

7LM in 3 structures; the first of them:

  • 5TW5 · Structure of mouse CD1d with bound glycosphingolipid JJ112 · 7LM A306 · binds MET69, VAL72, TYR73, SER76, PHE77, ASP80, ILE81, LEU84 and 17 more
  • 5TW5 · Structure of mouse CD1D with bound glycosphingolipid JJ112 · 7LM A306 · binds VAL72, TYR73, SER76, PHE77, ASP80, LEU84, ILE98, VAL118 and 10 more
  • 6CW9 · Structure of alpha-GC[8,16P] bound by CD1D and in complex with the VA14VB8.2 TCR · 7LM A308 · binds PRO29, ASN31, ASP94, ARG95, GLY96, VAL72, TYR73, SER76 and 15 more

Residues it binds most

VAL 3, LEU 3, ASP 3, PHE 3, THR 3, TRP 3, GLY 3, ILE 2, SER 3, TYR 3 (residue and the binding sites it lines).

Found with

  • PLM · Palmitic acid
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • FUC · alpha-L-fucopyranose

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