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Ligand · 778

778 · 4-[(5-{[4-(3-chlorophenyl)-3-oxopiperazin-1-yl]methyl}-1H-imidazol-1-yl)methyl]benzonitrile

778, 4-[(5-{[4-(3-chlorophenyl)-3-oxopiperazin-1-yl]methyl}-1H-imidazol-1-yl)methyl]benzonitrile (C22 H20 Cl N5 O, 405.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its…

Component
778
Formula
C22 H20 Cl N5 O
Class
ligand
Structures
6
PDB entries
3

Binding sites

778 in 6 structures; the first of them:

  • 1S63 · Human protein farnesyltransferase complexed with L-778,123 and FPP · 778 B3012 · binds TYR166, LEU96, SER99, TRP102, TRP106, ARG202, ASP297, CYS299 and 3 more
  • 1S64 · Rat protein geranylgeranyltransferase type-I complexed with L-778,123 and a sulfate anion · 778 B380 · binds TYR166, ALA123, ARG173, PHE174, CYS177, GLN212, HIS219, GLY221 and 9 more
  • 3Q7A · Cryptococcus neoformans protein farnesyltransferase in complex with FPP and L-778,123 · 778 B3012 · binds TYR109, LEU84, SER87, TRP90, TRP94, ARG197, ASP323, CYS325 and 3 more
  • 1S63 · Human protein farnesyltransferase complexed with L-778,123 and fpp · 778 B3012 · binds TYR166, LEU96, SER99, TRP102, TRP106, ARG202, ASP297, CYS299 and 3 more
  • 1S64 · Rat protein geranylgeranyltransferase type-I complexed with L-778,123 and a sulfate anion · 778 B380 · binds TYR166, ALA123, ARG173, PHE174, CYS177, GLN212, HIS219, GLY221 and 9 more
  • 3Q7A · Cryptococcus neoformans protein farnesyltransferase in complex with fpp and L-778,123 · 778 B3012 · binds TYR109, LEU84, SER87, TRP90, TRP94, ARG197, ASP323, CYS325 and 3 more

Residues it binds most

CYS 16, TYR 16, HIS 16, TRP 16, ARG 16, ASP 16, LEU 16, SER 16, ALA 12, GLN 12 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • FPP · Farnesyl diphosphate
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose
  • SO4 · Sulfate ion
  • 3FX · (2R)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid
  • CL · Chloride ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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