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Ligand · 6YW

6YW · [oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy) phosphoryl]oxy-phosphoryl]oxy-phosphoryl] phosphono hydrogen phosphate

6YW, [oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy) phosphoryl]oxy-phosphoryl]oxy-phosphoryl] phosphono hydrogen phosphate (H8 O19 P6, 497.9 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site…

Component
6YW
Formula
H8 O19 P6
Class
ligand
Structures
4
PDB entries
2

Binding sites

6YW in 4 structures; the first of them:

  • 5LLB · Structure of Polyphosphate Kinase 2 from Francisella tularensis with AMPPCH2PPP and… · 6YW A304 · binds TYR29, GLU30, LYS33, GLY68, ARG72, ARG178, LYS184, LYS187 and 3 more
  • 5LLF · Structure of Polyphosphate Kinase 2 mutant D117N from Francisella tularensis with… · 6YW D301 · binds ARG61, ASP62, ALA63, ALA64, GLY65, LYS66, GLY67, GLY68 and 7 more
  • 5LLB · Structure of polyphosphate kinase 2 from francisella tularensis with AMPPCH2PPP and… · 6YW A304 · binds TYR29, GLU30, LYS33, GLY68, ARG72, ARG178, LYS184, LYS187 and 3 more
  • 5LLF · Structure of polyphosphate kinase 2 mutant D117N from francisella tularensis with… · 6YW D301 · binds ASP62, ALA63, ALA64, GLY65, LYS66, GLY67, GLY68, ARG72 and 5 more

Residues it binds most

LYS 10, ARG 10, GLY 8, GLU 8, TYR 8, ALA 2, ASP 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • 6YX · [oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phospho
  • 6YY · bis[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate
  • 6YZ · [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[oxidanyl-[oxidanyl(phosphonooxy) phosphoryl]oxy-phosphoryl]methyl]phosphinic acid
  • MG · Magnesium ion
  • PO4 · Phosphate ion

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