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Ligand · 6VQ

6VQ · [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate

6VQ, [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]…

Component
6VQ
Formula
C22 H34 N10 O19 P4 S2 +2
Class
ligand
Structures
3
PDB entries
2

Binding sites

6VQ in 3 structures; the first of them:

  • 5KQ4 · Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2 and synthetic… · 6VQ E301 · binds ASN72, TRP43, GLY116, TRP117, LYS118, SER120, SER121, GLY122 and 4 more
  • 5KQ4 · Crystal structure of S. pombe DCP1/DCP2 in complex with H. sapiens PNRC2 and synthetic… · 6VQ E301 · binds TRP117, LYS118, SER120, SER121, GLY122, LYS129, ARG167, GLN169 and 1 more
  • 6AM0 · Crystal structure of K. lactis EDC1-DCP1-DCP2-EDC3 decapping complex with synthetic cap… · 6VQ A302 · binds TRP49, THR52, ASP53, LYS126, HIS127, ARG132, LYS134, HIS194 and 4 more

Residues it binds most

LYS 6, ARG 6, TRP 6, ASP 4, GLU 4, TYR 4, PHE 4, HIS 2, SER 2, ASN 3 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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