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Ligand · 6NO

6NO · Avilamycin

6NO, Avilamycin (C61 H88 Cl2 O32, 1404.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
6NO
Formula
C61 H88 Cl2 O32
Class
ligand
Structures
2
PDB entries
1

Binding sites

6NO in 2 structures; the first of them:

  • 5JVG · The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin · 6NO X2901 · binds A2448, G2449, A2450, G2451, A2457, U2458, C2459, G2460 and 11 more
  • 5JVG · The large ribosomal subunit from deinococcus radiodurans in complex with avilamycin · 6NO X2901 · binds A2448, G2449, A2450, G2451, A2457, U2458, C2459, G2460 and 11 more

Residues it binds most

G 2, A 2, ARG 2, C 2, ILE 2, SER 2, U 2 (residue and the binding sites it lines).

Found with

  • SPD · Spermidine
  • MG · Magnesium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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