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Ligand · 6E5

6E5 · N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide

6E5, N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide (C29 H31 N5 O2 S2, 545.7 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records…

Component
6E5
Formula
C29 H31 N5 O2 S2
Class
ligand
Structures
6
PDB entries
3

Binding sites

6E5 in 6 structures; the first of them:

  • 4UGR · Structure of Bacillus subtilis Nitric Oxide Synthase in complex with… · 6E5 A904 · binds ILE125, TRP126, ASN127, HIS128, GLN129, ALA147, PRO216, ILE218 and 15 more
  • 4UPO · Structure of rat neuronal nitric oxide synthase heme domain in complex with… · 6E5 A800 · binds MET336, LEU337, GLN478, PRO565, ALA566, VAL567, PHE584, SER585 and 11 more
  • 4UPS · Structure of bovine endothelial nitric oxide synthase heme domain in complex with… · 6E5 A800 · binds LEU107, GLN249, PRO336, ALA337, VAL338, ASN340, PHE355, SER356 and 10 more
  • 4UGR · Structure of bacillus subtilis nitric oxide synthase in complex with… · 6E5 A904 · binds ILE125, TRP126, ASN127, HIS128, GLN129, ALA147, PRO216, ILE218 and 15 more
  • 4UPO · Structure of rat neuronal nitric oxide synthase heme domain in complex with… · 6E5 A800 · binds MET336, LEU337, GLN478, PRO565, ALA566, VAL567, PHE584, SER585 and 11 more
  • 4UPS · Structure of bovine endothelial nitric oxide synthase heme domain in complex with… · 6E5 A800 · binds LEU107, GLN249, PRO336, ALA337, VAL338, ASN340, PHE355, SER356 and 10 more

Residues it binds most

TRP 10, TYR 10, GLN 10, PRO 10, MET 10, ASP 8, GLU 10, GLY 10, PHE 10, VAL 8 (residue and the binding sites it lines).

Found with

  • H4B · 5,6,7,8-tetrahydrobiopterin
  • HEM · Protoporphyrin IX containing Fe
  • ZN · Zinc ion
  • ACT · Acetate ion
  • GOL · Glycerol
  • CL · Chloride ion

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