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Ligand · 6CS

6CS · (4S,5S)-5-hydroxy-2-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid

6CS, (4S,5S)-5-hydroxy-2-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid (C6 H10 N2 O3, 158.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
6CS
Formula
C6 H10 N2 O3
Class
ligand
Structures
5
PDB entries
3

Binding sites

6CS in 5 structures; the first of them:

  • 2Q89 · Crystal structure of EhuB in complex with hydroxyectoine · 6CS A501 · binds GLU21, PHE24, TYR60, ALA77, GLY78, LEU79, PHE80, ARG85 and 7 more
  • 2VPO · High resolution structure of the periplasmic binding protein TeaA from TeaABC TRAP… · 6CS A1312 · binds GLU8, GLU9, GLN15, PHE66, GLU121, ARG144, MET146, TRP167 and 5 more
  • 4Q5O · Crystal structure of EctD from S. alaskensis with 2-oxoglutarate and 5-hydroxyectoine · 6CS A403 · binds GLN127, ARG129, PHE141, HIS144, ASP146, THR149, TRP150, HIS245 and 2 more
  • 2Q89 · Crystal structure of ehub in complex with hydroxyectoine · 6CS A501 · binds GLU21, PHE24, TYR60, ALA77, GLY78, LEU79, PHE80, ARG85 and 7 more
  • 2VPO · High resolution structure of the periplasmic binding protein teaa from teaabc trap… · 6CS A1312 · binds GLU8, GLU9, GLN15, PHE66, GLU121, ARG144, MET146, TRP167 and 5 more

Residues it binds most

PHE 7, GLU 6, ARG 8, TRP 6, PRO 6, GLN 6, GLY 2, LEU 3, ASN 4, HIS 2 (residue and the binding sites it lines).

Found with

  • CD · Cadmium ion
  • MG · Magnesium ion
  • AKG · 2-oxoglutaric acid
  • FE · Fe (III) ion

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