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Ligand · 6CM

6CM · N-((E,2S,3R)-1,3-dihydroxyoctadec-4-en-2-yl)hexanamide

6CM, N-((E,2S,3R)-1,3-dihydroxyoctadec-4-en-2-yl)hexanamide (C24 H47 N O3, 397.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
6CM
Formula
C24 H47 N O3
Class
ligand
Structures
2
PDB entries
2

Binding sites

6CM in 2 structures; the first of them:

  • 2E3N · Crystal structure of CERT START domain in complex with C6-ceramide (P212121) · 6CM A600 · binds PHE436, ARG442, TRP445, GLU446, THR448, GLN467, HIS469, VAL472 and 17 more
  • 7YIU · Cryo-EM structure of the C6-ceramide-bound SPT-ORMDL3 complex · 6CM D801 · binds TYR78, GLY79, VAL80, THR82, LEU83, PHE118, TYR122, ILE503 and 6 more

Residues it binds most

VAL 2, TYR 2, PHE 2, ALA 1, PRO 2, ARG 1, ASN 2, GLU 1, GLY 1, HIS 2 (residue and the binding sites it lines).

Found with

  • PLP · Pyridoxal-5'-phosphate
  • R16 · Hexadecane

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