Ligand · 6CF
6CF · 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine
6CF, 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine (C10 H16 F2 N3 O12 P3, 501.2 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (8 PDB entries). Every binding site…
- Component
- 6CF
- Formula
- C10 H16 F2 N3 O12 P3
- Class
- ligand
- Structures
- 16
- PDB entries
- 8
Binding sites
6CF in 16 structures; the first of them:
- 3RJH · Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG:dA at… · 6CF A401 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 3RJI · Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG at template… · 6CF A401 · binds GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192, TYR271 and 8 more
- 3RJK · Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG:dC base pair at… · 6CF A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 4F5N · Open ternary complex of R283K DNA polymerase beta with a metal free dCTP analog · 6CF A404 · binds ARG149, GLY179, SER180, ARG183, SER187, SER188, GLY189, ASP190 and 10 more
- 4F5O · Open ternary complex of R283K DNA polymerase beta with a one metal bound dCTP analog · 6CF A401 · binds ARG149, GLY179, SER180, PHE181, ARG183, SER188, GLY189, ASP190 and 5 more
- 4F5Q · Closed ternary complex of R283K DNA polymerase beta · 6CF A403 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 4F5R · Open and closed ternary complex of R283K DNA polymerase beta with a dCTP analog in the… · 6CF A402 · binds ARG149, GLY179, SER180, ARG183, SER187, SER188, GLY189, ASP190 and 9 more
- 4GXJ · R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dCTP analog · 6CF A401 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 10 more
- 3RJH · Ternary complex of DNA polymerase beta with a gapped DNA containing (SYN)8ODG:DA at… · 6CF A401 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 3RJI · Ternary complex of DNA polymerase beta with a gapped DNA containing 8ODG at template… · 6CF A401 · binds GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192, TYR271 and 8 more
- 3RJK · Ternary complex of DNA polymerase beta with a gapped DNA containing 8ODG:DC base pair at… · 6CF A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 4F5N · Open ternary complex of R283K DNA polymerase beta with a metal free dctp analog · 6CF A404 · binds ARG149, GLY179, SER180, ARG183, SER187, SER188, GLY189, ASP190 and 10 more
- 4F5O · Open ternary complex of R283K DNA polymerase beta with a one metal bound dctp analog · 6CF A401 · binds ARG149, GLY179, SER180, PHE181, ARG183, SER188, GLY189, ASP190 and 5 more
- 4F5Q · Closed ternary complex of R283K DNA polymerase beta · 6CF A403 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
- 4F5R · Open and closed ternary complex of R283K DNA polymerase beta with a dctp analog in the… · 6CF A402 · binds ARG149, GLY179, SER180, ARG183, SER187, SER188, GLY189, ASP190 and 9 more
- 4GXJ · R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dctp analog · 6CF A401 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 10 more
Residues it binds most
ASP 18, SER 18, GLY 18, ARG 18, PHE 18, DG 12, TYR 18, ASN 16, THR 16, DC 10 (residue and the binding sites it lines).
Found with
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