GL1X · GenesisL1 explorer

Ligand · 65I

65I · (9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate

65I, (9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate (C22 H44 N O8 P, 481.6 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with…

Component
65I
Formula
C22 H44 N O8 P
Class
ligand
Structures
5
PDB entries
4

Binding sites

65I in 5 structures; the first of them:

  • 7L2T · cryo-EM structure of DkTx-bound minimal TRPV1 in partial open state · 65I F901 · binds ALA66, PHE67, ILE68, LEU664, LEU585, LEU630, TYR631, CYS634 and 2 more
  • 8KB4 · Cryo-EM structure of human TMEM87A A308M · 65I A903 · binds ARG305, PHE364, ILE365, LEU367, ASP371, ARG427
  • 7L2R · Cryo-EM structure of dktx-bound minimal TRPV1 at the pre-open state · 65I A802 · binds MET581, TYR631, PHE638, ALA66, PHE67, TYR453, ILE668
  • 7L2T · Cryo-EM structure of dktx-bound minimal TRPV1 in partial open state · 65I F901 · binds ALA66, PHE67, ILE68, TYR631, CYS634, LEU635, PHE638
  • 7TYS · Cryo-EM structure of the pancreatic ATP-sensitive potassium channel bound to ATP and… · 65I E1601 · binds VAL89, LEU92, ILE93, ALA96, LEU144, ILE148, GLY20, VAL21 and 1 more

Residues it binds most

LEU 15, PHE 17, TYR 14, ILE 14, ALA 9, CYS 9, MET 8, GLU 6, VAL 4, TRP 3 (residue and the binding sites it lines).

Found with

  • XJ7 · (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2r,3s,4s,5r, 6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate
  • NA · Sodium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ATP · Adenosine-5'-triphosphate
  • BJX · Repaglinide
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • K · Potassium ion

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